Detailed information of SNP:
|
SNP ID:
sf1123811501(Gbrowse)
Chromosome: chr11 Position: 23811501 |
Major allele:
T
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1418 | 61.78% | 38.22% |
| All Indica | 799 | 94.24% | 5.76% |
| All Japonica | 496 | 20.16% | 79.84% |
| Aus | 67 | 2.99% | 97.01% |
| Indica I | 375 | 93.33% | 6.67% |
| Indica II | 213 | 95.77% | 4.23% |
| Indica Intermediate | 211 | 94.31% | 5.69% |
| Temperate Japonica | 335 | 15.52% | 84.48% |
| Tropical Japonica | 93 | 9.68% | 90.32% |
| Japonica Intermediate | 68 | 57.35% | 42.65% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 42 | 50.00% | 50.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1123811501 | C->T | INTERGENIC | None |