Detailed information of SNP:
|
SNP ID:
sf1123826152(Gbrowse)
Chromosome: chr11 Position: 23826152 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1418 | 53.31% | 46.69% |
| All Indica | 798 | 35.09% | 64.91% |
| All Japonica | 497 | 84.71% | 15.29% |
| Aus | 67 | 37.31% | 62.69% |
| Indica I | 375 | 22.13% | 77.87% |
| Indica II | 213 | 44.13% | 55.87% |
| Indica Intermediate | 210 | 49.05% | 50.95% |
| Temperate Japonica | 335 | 89.85% | 10.15% |
| Tropical Japonica | 94 | 91.49% | 8.51% |
| Japonica Intermediate | 68 | 50.00% | 50.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 38.10% | 61.90% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1123826152 | G->A | INTERGENIC | None |