Detailed information of SNP:
|
SNP ID:
sf1123826858(Gbrowse)
Chromosome: chr11 Position: 23826858 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1415 | 56.18% | 43.82% |
| All Indica | 798 | 34.84% | 65.16% |
| All Japonica | 494 | 84.41% | 15.59% |
| Aus | 67 | 97.01% | 2.99% |
| Indica I | 375 | 22.13% | 77.87% |
| Indica II | 213 | 42.72% | 57.28% |
| Indica Intermediate | 210 | 49.52% | 50.48% |
| Temperate Japonica | 335 | 89.85% | 10.15% |
| Tropical Japonica | 91 | 89.01% | 10.99% |
| Japonica Intermediate | 68 | 51.47% | 48.53% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 50.00% | 50.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1123826858 | C->T | INTERGENIC | None |