Detailed information of SNP:
|
SNP ID:
sf1123837313(Gbrowse)
Chromosome: chr11 Position: 23837313 |
Major allele:
A
Minor allele: T Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1414 | 80.98% | 19.02% |
| All Indica | 796 | 70.98% | 29.02% |
| All Japonica | 496 | 98.59% | 1.41% |
| Aus | 66 | 75.76% | 24.24% |
| Indica I | 374 | 79.95% | 20.05% |
| Indica II | 212 | 62.74% | 37.26% |
| Indica Intermediate | 210 | 63.33% | 36.67% |
| Temperate Japonica | 334 | 98.50% | 1.50% |
| Tropical Japonica | 94 | 97.87% | 2.13% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 42 | 95.24% | 4.76% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1123837313 | A->T | LOC_Os11g40690(LOC_Os11g40690.1) | INTRON |