Detailed information of SNP:
|
SNP ID:
sf1123837856(Gbrowse)
Chromosome: chr11 Position: 23837856 |
Major allele:
G
Minor allele: C Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1418 | 57.83% | 42.17% |
| All Indica | 798 | 42.48% | 57.52% |
| All Japonica | 497 | 77.87% | 22.13% |
| Aus | 67 | 92.54% | 7.46% |
| Indica I | 375 | 30.67% | 69.33% |
| Indica II | 212 | 52.36% | 47.64% |
| Indica Intermediate | 211 | 53.55% | 46.45% |
| Temperate Japonica | 335 | 88.06% | 11.94% |
| Tropical Japonica | 94 | 70.21% | 29.79% |
| Japonica Intermediate | 68 | 38.24% | 61.76% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 42.86% | 57.14% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1123837856 | G->C | LOC_Os11g40690(LOC_Os11g40690.1) | INTRON |