Detailed information of SNP:
|
SNP ID:
sf1123838247(Gbrowse)
Chromosome: chr11 Position: 23838247 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1399 | 78.70% | 21.30% |
| All Indica | 780 | 67.31% | 32.69% |
| All Japonica | 497 | 97.99% | 2.01% |
| Aus | 67 | 71.64% | 28.36% |
| Indica I | 364 | 76.92% | 23.08% |
| Indica II | 208 | 56.25% | 43.75% |
| Indica Intermediate | 208 | 61.54% | 38.46% |
| Temperate Japonica | 335 | 98.21% | 1.79% |
| Tropical Japonica | 94 | 95.74% | 4.26% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 41 | 97.56% | 2.44% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1123838247 | C->T | LOC_Os11g40690(LOC_Os11g40690.1) | INTRON |