Detailed information of SNP:
|
SNP ID:
sf1123839147(Gbrowse)
Chromosome: chr11 Position: 23839147 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1404 | 80.48% | 19.52% |
| All Indica | 785 | 69.81% | 30.19% |
| All Japonica | 496 | 98.59% | 1.41% |
| Aus | 67 | 76.12% | 23.88% |
| Indica I | 370 | 80.27% | 19.73% |
| Indica II | 208 | 57.69% | 42.31% |
| Indica Intermediate | 207 | 63.29% | 36.71% |
| Temperate Japonica | 334 | 98.80% | 1.20% |
| Tropical Japonica | 94 | 96.81% | 3.19% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 42 | 97.62% | 2.38% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1123839147 | G->A | LOC_Os11g40690(LOC_Os11g40690.1) | INTRON |