Detailed information of SNP:
|
SNP ID:
sf1123839825(Gbrowse)
Chromosome: chr11 Position: 23839825 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1403 | 81.33% | 18.67% |
| All Indica | 788 | 72.34% | 27.66% |
| All Japonica | 492 | 92.68% | 7.32% |
| Aus | 67 | 95.52% | 4.48% |
| Indica I | 371 | 80.59% | 19.41% |
| Indica II | 210 | 64.76% | 35.24% |
| Indica Intermediate | 207 | 65.22% | 34.78% |
| Temperate Japonica | 331 | 97.58% | 2.42% |
| Tropical Japonica | 94 | 77.66% | 22.34% |
| Japonica Intermediate | 67 | 89.55% | 10.45% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 88.10% | 11.90% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1123839825 | C->T | LOC_Os11g40690(LOC_Os11g40690.1) | INTRON |