Detailed information of SNP:
|
SNP ID:
sf1123862253(Gbrowse)
Chromosome: chr11 Position: 23862253 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1419 | 80.62% | 19.38% |
| All Indica | 799 | 96.62% | 3.38% |
| All Japonica | 497 | 62.17% | 37.83% |
| Aus | 67 | 41.79% | 58.21% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 213 | 89.67% | 10.33% |
| Indica Intermediate | 211 | 97.63% | 2.37% |
| Temperate Japonica | 335 | 66.57% | 33.43% |
| Tropical Japonica | 94 | 39.36% | 60.64% |
| Japonica Intermediate | 68 | 72.06% | 27.94% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 42 | 80.95% | 19.05% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1123862253 | T->C | INTERGENIC | None |