Detailed information of SNP:
|
SNP ID:
sf1123865211(Gbrowse)
Chromosome: chr11 Position: 23865211 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1417 | 66.27% | 33.73% |
| All Indica | 798 | 94.74% | 5.26% |
| All Japonica | 496 | 23.79% | 76.21% |
| Aus | 67 | 34.33% | 65.67% |
| Indica I | 375 | 98.93% | 1.07% |
| Indica II | 212 | 91.04% | 8.96% |
| Indica Intermediate | 211 | 91.00% | 9.00% |
| Temperate Japonica | 334 | 11.38% | 88.62% |
| Tropical Japonica | 94 | 64.89% | 35.11% |
| Japonica Intermediate | 68 | 27.94% | 72.06% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 69.05% | 30.95% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1123865211 | T->C | INTERGENIC | None |