Detailed information of SNP:
|
SNP ID:
sf1123869393(Gbrowse)
Chromosome: chr11 Position: 23869393 |
Major allele:
T
Minor allele: A Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1419 | 93.16% | 6.84% |
| All Indica | 799 | 96.25% | 3.75% |
| All Japonica | 497 | 95.17% | 4.83% |
| Aus | 67 | 43.28% | 56.72% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 213 | 92.02% | 7.98% |
| Indica Intermediate | 211 | 93.84% | 6.16% |
| Temperate Japonica | 335 | 97.01% | 2.99% |
| Tropical Japonica | 94 | 89.36% | 10.64% |
| Japonica Intermediate | 68 | 94.12% | 5.88% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 88.10% | 11.90% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1123869393 | T->A | INTERGENIC | None |