Detailed information of SNP:
|
SNP ID:
sf1123869435(Gbrowse)
Chromosome: chr11 Position: 23869435 |
Major allele:
G
Minor allele: C Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1417 | 88.92% | 11.08% |
| All Indica | 798 | 89.47% | 10.53% |
| All Japonica | 496 | 94.96% | 5.04% |
| Aus | 67 | 37.31% | 62.69% |
| Indica I | 375 | 93.60% | 6.40% |
| Indica II | 213 | 87.32% | 12.68% |
| Indica Intermediate | 210 | 84.29% | 15.71% |
| Temperate Japonica | 334 | 96.71% | 3.29% |
| Tropical Japonica | 94 | 89.36% | 10.64% |
| Japonica Intermediate | 68 | 94.12% | 5.88% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 85.71% | 14.29% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1123869435 | G->C | INTERGENIC | None |