Detailed information of SNP:
|
SNP ID:
sf1123874382(Gbrowse)
Chromosome: chr11 Position: 23874382 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1414 | 86.14% | 13.86% |
| All Indica | 798 | 88.85% | 11.15% |
| All Japonica | 494 | 90.28% | 9.72% |
| Aus | 66 | 18.18% | 81.82% |
| Indica I | 375 | 82.67% | 17.33% |
| Indica II | 213 | 92.02% | 7.98% |
| Indica Intermediate | 210 | 96.67% | 3.33% |
| Temperate Japonica | 332 | 85.84% | 14.16% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 88.10% | 11.90% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1123874382 | G->A | INTERGENIC | None |