Detailed information of SNP:
|
SNP ID:
sf1123875085(Gbrowse)
Chromosome: chr11 Position: 23875085 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1417 | 91.39% | 8.61% |
| All Indica | 797 | 90.84% | 9.16% |
| All Japonica | 497 | 99.60% | 0.40% |
| Aus | 67 | 37.31% | 62.69% |
| Indica I | 375 | 93.87% | 6.13% |
| Indica II | 213 | 88.26% | 11.74% |
| Indica Intermediate | 209 | 88.04% | 11.96% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 88.10% | 11.90% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1123875085 | G->A | INTERGENIC | None |