Detailed information of SNP:
|
SNP ID:
sf1123877187(Gbrowse)
Chromosome: chr11 Position: 23877187 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1419 | 92.18% | 7.82% |
| All Indica | 799 | 92.87% | 7.13% |
| All Japonica | 497 | 90.14% | 9.86% |
| Aus | 67 | 94.03% | 5.97% |
| Indica I | 375 | 93.87% | 6.13% |
| Indica II | 213 | 95.77% | 4.23% |
| Indica Intermediate | 211 | 88.15% | 11.85% |
| Temperate Japonica | 335 | 85.67% | 14.33% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 97.62% | 2.38% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1123877187 | G->A | INTERGENIC | None |