Detailed information of SNP:
|
SNP ID:
sf1123881847(Gbrowse)
Chromosome: chr11 Position: 23881847 |
Major allele:
C
Minor allele: G Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1416 | 89.19% | 10.81% |
| All Indica | 797 | 88.96% | 11.04% |
| All Japonica | 497 | 99.40% | 0.60% |
| Aus | 67 | 16.42% | 83.58% |
| Indica I | 374 | 90.64% | 9.36% |
| Indica II | 213 | 88.26% | 11.74% |
| Indica Intermediate | 210 | 86.67% | 13.33% |
| Temperate Japonica | 335 | 99.40% | 0.60% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 85.37% | 14.63% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1123881847 | C->G | INTERGENIC | None |