Detailed information of SNP:
|
SNP ID:
sf1123941607(Gbrowse)
Chromosome: chr11 Position: 23941607 |
Major allele:
A
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1418 | 59.31% | 40.69% |
| All Indica | 798 | 46.99% | 53.01% |
| All Japonica | 497 | 72.84% | 27.16% |
| Aus | 67 | 97.01% | 2.99% |
| Indica I | 374 | 37.43% | 62.57% |
| Indica II | 213 | 49.30% | 50.70% |
| Indica Intermediate | 211 | 61.61% | 38.39% |
| Temperate Japonica | 335 | 61.79% | 38.21% |
| Tropical Japonica | 94 | 96.81% | 3.19% |
| Japonica Intermediate | 68 | 94.12% | 5.88% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 59.52% | 40.48% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1123941607 | G->A | INTERGENIC | None |