Detailed information of SNP:
|
SNP ID:
sf1123944319(Gbrowse)
Chromosome: chr11 Position: 23944319 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1306 | 64.85% | 35.15% |
| All Indica | 793 | 68.98% | 31.02% |
| All Japonica | 401 | 60.60% | 39.40% |
| Aus | 62 | 48.39% | 51.61% |
| Indica I | 370 | 79.46% | 20.54% |
| Indica II | 213 | 59.62% | 40.38% |
| Indica Intermediate | 210 | 60.00% | 40.00% |
| Temperate Japonica | 306 | 72.88% | 27.12% |
| Tropical Japonica | 67 | 16.42% | 83.58% |
| Japonica Intermediate | 28 | 32.14% | 67.86% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 36 | 72.22% | 27.78% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1123944319 | T->C | INTERGENIC | None |