Detailed information of SNP:
|
SNP ID:
sf1123950374(Gbrowse)
Chromosome: chr11 Position: 23950374 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1419 | 71.81% | 28.19% |
| All Indica | 799 | 67.83% | 32.17% |
| All Japonica | 497 | 82.49% | 17.51% |
| Aus | 67 | 46.27% | 53.73% |
| Indica I | 375 | 78.40% | 21.60% |
| Indica II | 213 | 56.34% | 43.66% |
| Indica Intermediate | 211 | 60.66% | 39.34% |
| Temperate Japonica | 335 | 80.30% | 19.70% |
| Tropical Japonica | 94 | 82.98% | 17.02% |
| Japonica Intermediate | 68 | 92.65% | 7.35% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 42 | 83.33% | 16.67% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1123950374 | T->C | INTERGENIC | None |