Detailed information of SNP:
|
SNP ID:
sf1123956371(Gbrowse)
Chromosome: chr11 Position: 23956371 |
Major allele:
G
Minor allele: T Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1414 | 74.89% | 25.11% |
| All Indica | 798 | 67.79% | 32.21% |
| All Japonica | 493 | 91.68% | 8.32% |
| Aus | 67 | 46.27% | 53.73% |
| Indica I | 375 | 78.67% | 21.33% |
| Indica II | 212 | 56.60% | 43.40% |
| Indica Intermediate | 211 | 59.72% | 40.28% |
| Temperate Japonica | 331 | 93.35% | 6.65% |
| Tropical Japonica | 94 | 84.04% | 15.96% |
| Japonica Intermediate | 68 | 94.12% | 5.88% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 42 | 80.95% | 19.05% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1123956371 | G->T | LOC_Os11g40810(LOC_Os11g40810.1) | Non-Synonymous SNP |