Detailed information of SNP:
|
SNP ID:
sf1123982332(Gbrowse)
Chromosome: chr11 Position: 23982332 |
Major allele:
T
Minor allele: G Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1415 | 64.45% | 35.55% |
| All Indica | 796 | 69.97% | 30.03% |
| All Japonica | 496 | 60.89% | 39.11% |
| Aus | 67 | 34.33% | 65.67% |
| Indica I | 374 | 82.35% | 17.65% |
| Indica II | 213 | 52.11% | 47.89% |
| Indica Intermediate | 209 | 66.03% | 33.97% |
| Temperate Japonica | 335 | 65.37% | 34.63% |
| Tropical Japonica | 94 | 65.96% | 34.04% |
| Japonica Intermediate | 67 | 31.34% | 68.66% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 42 | 71.43% | 28.57% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1123982332 | T->G | INTERGENIC | None |