Detailed information of SNP:
|
SNP ID:
sf1123993297(Gbrowse)
Chromosome: chr11 Position: 23993297 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1393 | 67.41% | 32.59% |
| All Indica | 777 | 49.42% | 50.58% |
| All Japonica | 495 | 98.18% | 1.82% |
| Aus | 67 | 68.66% | 31.34% |
| Indica I | 364 | 52.20% | 47.80% |
| Indica II | 209 | 33.01% | 66.99% |
| Indica Intermediate | 204 | 61.27% | 38.73% |
| Temperate Japonica | 333 | 98.50% | 1.50% |
| Tropical Japonica | 94 | 97.87% | 2.13% |
| Japonica Intermediate | 68 | 97.06% | 2.94% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 40 | 55.00% | 45.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1123993297 | C->T | INTERGENIC | None |