Detailed information of SNP:
|
SNP ID:
sf1124002292(Gbrowse)
Chromosome: chr11 Position: 24002292 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1418 | 91.75% | 8.25% |
| All Indica | 799 | 96.62% | 3.38% |
| All Japonica | 496 | 95.16% | 4.84% |
| Aus | 67 | 28.36% | 71.64% |
| Indica I | 375 | 99.73% | 0.27% |
| Indica II | 213 | 90.61% | 9.39% |
| Indica Intermediate | 211 | 97.16% | 2.84% |
| Temperate Japonica | 334 | 97.60% | 2.40% |
| Tropical Japonica | 94 | 87.23% | 12.77% |
| Japonica Intermediate | 68 | 94.12% | 5.88% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 42 | 88.10% | 11.90% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1124002292 | G->A | INTERGENIC | None |