Detailed information of SNP:
|
SNP ID:
sf1124003455(Gbrowse)
Chromosome: chr11 Position: 24003455 |
Major allele:
A
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1228 | 74.84% | 25.16% |
| All Indica | 614 | 91.69% | 8.31% |
| All Japonica | 494 | 56.48% | 43.52% |
| Aus | 66 | 69.70% | 30.30% |
| Indica I | 311 | 93.57% | 6.43% |
| Indica II | 153 | 84.97% | 15.03% |
| Indica Intermediate | 150 | 94.67% | 5.33% |
| Temperate Japonica | 334 | 55.69% | 44.31% |
| Tropical Japonica | 92 | 47.83% | 52.17% |
| Japonica Intermediate | 68 | 72.06% | 27.94% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 40 | 75.00% | 25.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1124003455 | G->A | INTERGENIC | None |