Detailed information of SNP:
|
SNP ID:
sf1124008110(Gbrowse)
Chromosome: chr11 Position: 24008110 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1401 | 56.32% | 43.68% |
| All Indica | 798 | 39.47% | 60.53% |
| All Japonica | 480 | 92.29% | 7.71% |
| Aus | 67 | 19.40% | 80.60% |
| Indica I | 375 | 37.33% | 62.67% |
| Indica II | 213 | 31.92% | 68.08% |
| Indica Intermediate | 210 | 50.95% | 49.05% |
| Temperate Japonica | 325 | 93.85% | 6.15% |
| Tropical Japonica | 91 | 89.01% | 10.99% |
| Japonica Intermediate | 64 | 89.06% | 10.94% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 42 | 40.48% | 59.52% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1124008110 | G->A | INTERGENIC | None |