Detailed information of SNP:
|
SNP ID:
sf1124008381(Gbrowse)
Chromosome: chr11 Position: 24008381 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1405 | 62.42% | 37.58% |
| All Indica | 789 | 48.42% | 51.58% |
| All Japonica | 494 | 93.12% | 6.88% |
| Aus | 66 | 22.73% | 77.27% |
| Indica I | 369 | 50.68% | 49.32% |
| Indica II | 213 | 34.27% | 65.73% |
| Indica Intermediate | 207 | 58.94% | 41.06% |
| Temperate Japonica | 334 | 94.61% | 5.39% |
| Tropical Japonica | 94 | 90.43% | 9.57% |
| Japonica Intermediate | 66 | 89.39% | 10.61% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 42 | 45.24% | 54.76% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1124008381 | C->T | INTERGENIC | None |