Detailed information of SNP:
|
SNP ID:
sf1124100360(Gbrowse)
Chromosome: chr11 Position: 24100360 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1401 | 53.89% | 46.11% |
| All Indica | 781 | 33.29% | 66.71% |
| All Japonica | 497 | 93.56% | 6.44% |
| Aus | 67 | 13.43% | 86.57% |
| Indica I | 364 | 37.64% | 62.36% |
| Indica II | 212 | 13.21% | 86.79% |
| Indica Intermediate | 205 | 46.34% | 53.66% |
| Temperate Japonica | 335 | 95.22% | 4.78% |
| Tropical Japonica | 94 | 89.36% | 10.64% |
| Japonica Intermediate | 68 | 91.18% | 8.82% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 42 | 47.62% | 52.38% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1124100360 | A->G | LOC_Os11g41034(LOC_Os11g41034.1) | INTRON |