Detailed information of SNP:
|
SNP ID:
sf1124115497(Gbrowse)
Chromosome: chr11 Position: 24115497 |
Major allele:
T
Minor allele: G Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1386 | 82.18% | 17.82% |
| All Indica | 799 | 97.75% | 2.25% |
| All Japonica | 495 | 56.36% | 43.64% |
| Aus | 39 | 82.05% | 17.95% |
| Indica I | 375 | 96.00% | 4.00% |
| Indica II | 213 | 99.06% | 0.94% |
| Indica Intermediate | 211 | 99.53% | 0.47% |
| Temperate Japonica | 335 | 56.12% | 43.88% |
| Tropical Japonica | 93 | 51.61% | 48.39% |
| Japonica Intermediate | 67 | 64.18% | 35.82% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 39 | 87.18% | 12.82% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1124115497 | T->G | INTERGENIC | None |