Detailed information of SNP:
|
SNP ID:
sf1124121325(Gbrowse)
Chromosome: chr11 Position: 24121325 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1402 | 80.17% | 19.83% |
| All Indica | 796 | 92.21% | 7.79% |
| All Japonica | 486 | 59.47% | 40.53% |
| Aus | 66 | 84.85% | 15.15% |
| Indica I | 373 | 97.05% | 2.95% |
| Indica II | 212 | 80.19% | 19.81% |
| Indica Intermediate | 211 | 95.73% | 4.27% |
| Temperate Japonica | 330 | 74.55% | 25.45% |
| Tropical Japonica | 93 | 30.11% | 69.89% |
| Japonica Intermediate | 63 | 23.81% | 76.19% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 40 | 77.50% | 22.50% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1124121325 | G->A | INTERGENIC | None |