Detailed information of SNP:
|
SNP ID:
sf1124151491(Gbrowse)
Chromosome: chr11 Position: 24151491 |
Major allele:
C
Minor allele: A Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1382 | 86.98% | 13.02% |
| All Indica | 799 | 98.62% | 1.38% |
| All Japonica | 462 | 73.59% | 26.41% |
| Aus | 67 | 44.78% | 55.22% |
| Indica I | 375 | 97.60% | 2.40% |
| Indica II | 213 | 100.00% | 0.00% |
| Indica Intermediate | 211 | 99.05% | 0.95% |
| Temperate Japonica | 310 | 77.42% | 22.58% |
| Tropical Japonica | 91 | 76.92% | 23.08% |
| Japonica Intermediate | 61 | 49.18% | 50.82% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 40 | 77.50% | 22.50% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1124151491 | C->A | LOC_Os11g41100(LOC_Os11g41100.1) | Non-Synonymous SNP |