Detailed information of SNP:
|
SNP ID:
sf1124152163(Gbrowse)
Chromosome: chr11 Position: 24152163 |
Major allele:
A
Minor allele: C Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1414 | 75.88% | 24.12% |
| All Indica | 795 | 99.37% | 0.63% |
| All Japonica | 497 | 38.43% | 61.57% |
| Aus | 67 | 79.10% | 20.90% |
| Indica I | 374 | 99.73% | 0.27% |
| Indica II | 210 | 98.57% | 1.43% |
| Indica Intermediate | 211 | 99.53% | 0.47% |
| Temperate Japonica | 335 | 47.76% | 52.24% |
| Tropical Japonica | 94 | 23.40% | 76.60% |
| Japonica Intermediate | 68 | 13.24% | 86.76% |
| Group VI/Aromatic | 13 | 92.31% | 7.69% |
| Intermediate | 42 | 64.29% | 35.71% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1124152163 | A->C | LOC_Os11g41100(LOC_Os11g41100.1) | Synonymous |