Detailed information of SNP:
|
SNP ID:
sf1124158989(Gbrowse)
Chromosome: chr11 Position: 24158989 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1415 | 55.69% | 44.31% |
| All Indica | 795 | 29.94% | 70.06% |
| All Japonica | 497 | 95.37% | 4.63% |
| Aus | 67 | 79.10% | 20.90% |
| Indica I | 373 | 31.10% | 68.90% |
| Indica II | 212 | 12.74% | 87.26% |
| Indica Intermediate | 210 | 45.24% | 54.76% |
| Temperate Japonica | 335 | 96.42% | 3.58% |
| Tropical Japonica | 94 | 92.55% | 7.45% |
| Japonica Intermediate | 68 | 94.12% | 5.88% |
| Group VI/Aromatic | 14 | 14.29% | 85.71% |
| Intermediate | 42 | 50.00% | 50.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1124158989 | T->C | INTERGENIC | None |