Detailed information of SNP:
|
SNP ID:
sf1124180509(Gbrowse)
Chromosome: chr11 Position: 24180509 |
Major allele:
G
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1418 | 74.89% | 25.11% |
| All Indica | 799 | 99.50% | 0.50% |
| All Japonica | 496 | 38.51% | 61.49% |
| Aus | 67 | 58.21% | 41.79% |
| Indica I | 375 | 99.73% | 0.27% |
| Indica II | 213 | 99.06% | 0.94% |
| Indica Intermediate | 211 | 99.53% | 0.47% |
| Temperate Japonica | 334 | 26.65% | 73.35% |
| Tropical Japonica | 94 | 64.89% | 35.11% |
| Japonica Intermediate | 68 | 60.29% | 39.71% |
| Group VI/Aromatic | 14 | 21.43% | 78.57% |
| Intermediate | 42 | 80.95% | 19.05% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1124180509 | T->G | LOC_Os11g41130(LOC_Os11g41130.2) | UTR_3_PRIME |
| sf1124180509 | T->G | LOC_Os11g41130(LOC_Os11g41130.1) | UTR_3_PRIME |