Detailed information of SNP:
|
SNP ID:
sf1124181177(Gbrowse)
Chromosome: chr11 Position: 24181177 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1380 | 87.03% | 12.97% |
| All Indica | 799 | 98.12% | 1.88% |
| All Japonica | 458 | 65.94% | 34.06% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 213 | 98.59% | 1.41% |
| Indica Intermediate | 211 | 94.31% | 5.69% |
| Temperate Japonica | 330 | 62.12% | 37.88% |
| Tropical Japonica | 67 | 64.18% | 35.82% |
| Japonica Intermediate | 61 | 88.52% | 11.48% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 80.95% | 19.05% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1124181177 | A->G | INTERGENIC | None |