Detailed information of SNP:
|
SNP ID:
sf1124182429(Gbrowse)
Chromosome: chr11 Position: 24182429 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1418 | 88.43% | 11.57% |
| All Indica | 799 | 99.75% | 0.25% |
| All Japonica | 496 | 75.60% | 24.40% |
| Aus | 67 | 62.69% | 37.31% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 213 | 99.06% | 0.94% |
| Indica Intermediate | 211 | 100.00% | 0.00% |
| Temperate Japonica | 334 | 78.74% | 21.26% |
| Tropical Japonica | 94 | 68.09% | 31.91% |
| Japonica Intermediate | 68 | 70.59% | 29.41% |
| Group VI/Aromatic | 14 | 35.71% | 64.29% |
| Intermediate | 42 | 83.33% | 16.67% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1124182429 | G->A | LOC_Os11g41140(LOC_Os11g41140.1) | INTRON |