Detailed information of SNP:



SNP ID: sf1124186260(Gbrowse)

Chromosome: chr11

Position: 24186260
Major allele: A

Minor allele: C

Reference allele: A

Allele Frequencies:


NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.


PopulationsPopulation SizeFrequency of A(major allele)Frequency of C(minor allele)
All1419 93.16% 6.84%
All Indica799 99.75% 0.25%
All Japonica497 82.29% 17.71%
Aus67 100.00% 0.00%
Indica I375 100.00% 0.00%
Indica II213 99.06% 0.94%
Indica Intermediate211 100.00% 0.00%
Temperate Japonica335 81.49% 18.51%
Tropical Japonica94 74.47% 25.53%
Japonica Intermediate68 97.06% 2.94%
Group VI/Aromatic14 100.00% 0.00%
Intermediate42 83.33% 16.67%

Allele Var Effect:


SNP ID Var Gene Effect/Location
sf1124186260 A->C LOC_Os11g41150(LOC_Os11g41150.1) INTRON