Detailed information of SNP:
|
SNP ID:
sf1124194368(Gbrowse)
Chromosome: chr11 Position: 24194368 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1184 | 95.44% | 4.56% |
| All Indica | 578 | 96.02% | 3.98% |
| All Japonica | 490 | 100.00% | 0.00% |
| Aus | 66 | 62.12% | 37.88% |
| Indica I | 292 | 95.89% | 4.11% |
| Indica II | 137 | 98.54% | 1.46% |
| Indica Intermediate | 149 | 93.96% | 6.04% |
| Temperate Japonica | 330 | 100.00% | 0.00% |
| Tropical Japonica | 93 | 100.00% | 0.00% |
| Japonica Intermediate | 67 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 78.57% | 21.43% |
| Intermediate | 36 | 91.67% | 8.33% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1124194368 | C->T | INTERGENIC | None |