Detailed information of SNP:
|
SNP ID:
sf1124201664(Gbrowse)
Chromosome: chr11 Position: 24201664 |
Major allele:
T
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1417 | 70.36% | 29.64% |
| All Indica | 799 | 95.49% | 4.51% |
| All Japonica | 495 | 25.25% | 74.75% |
| Aus | 67 | 98.51% | 1.49% |
| Indica I | 375 | 96.00% | 4.00% |
| Indica II | 213 | 97.65% | 2.35% |
| Indica Intermediate | 211 | 92.42% | 7.58% |
| Temperate Japonica | 334 | 8.98% | 91.02% |
| Tropical Japonica | 93 | 65.59% | 34.41% |
| Japonica Intermediate | 68 | 50.00% | 50.00% |
| Group VI/Aromatic | 14 | 85.71% | 14.29% |
| Intermediate | 42 | 73.81% | 26.19% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1124201664 | G->T | INTERGENIC | None |