Detailed information of SNP:
|
SNP ID:
sf1124239493(Gbrowse)
Chromosome: chr11 Position: 24239493 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1388 | 98.63% | 1.37% |
| All Indica | 768 | 97.66% | 2.34% |
| All Japonica | 497 | 100.00% | 0.00% |
| Aus | 67 | 98.51% | 1.49% |
| Indica I | 355 | 96.34% | 3.66% |
| Indica II | 209 | 98.56% | 1.44% |
| Indica Intermediate | 204 | 99.02% | 0.98% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 100.00% | 0.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1124239493 | C->T | INTERGENIC | None |