Detailed information of SNP:
|
SNP ID:
sf1124249916(Gbrowse)
Chromosome: chr11 Position: 24249916 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1418 | 82.79% | 17.21% |
| All Indica | 798 | 81.20% | 18.80% |
| All Japonica | 497 | 87.53% | 12.47% |
| Aus | 67 | 58.21% | 41.79% |
| Indica I | 375 | 74.67% | 25.33% |
| Indica II | 213 | 93.43% | 6.57% |
| Indica Intermediate | 210 | 80.48% | 19.52% |
| Temperate Japonica | 335 | 92.84% | 7.16% |
| Tropical Japonica | 94 | 93.62% | 6.38% |
| Japonica Intermediate | 68 | 52.94% | 47.06% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 90.48% | 9.52% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1124249916 | C->T | LOC_Os11g41210(LOC_Os11g41210.1) | Synonymous |