Detailed information of SNP:
|
SNP ID:
sf1124256438(Gbrowse)
Chromosome: chr11 Position: 24256438 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1418 | 64.10% | 35.90% |
| All Indica | 799 | 70.09% | 29.91% |
| All Japonica | 496 | 64.72% | 35.28% |
| Aus | 67 | 5.97% | 94.03% |
| Indica I | 375 | 67.20% | 32.80% |
| Indica II | 213 | 82.63% | 17.37% |
| Indica Intermediate | 211 | 62.56% | 37.44% |
| Temperate Japonica | 335 | 78.51% | 21.49% |
| Tropical Japonica | 93 | 36.56% | 63.44% |
| Japonica Intermediate | 68 | 35.29% | 64.71% |
| Group VI/Aromatic | 14 | 14.29% | 85.71% |
| Intermediate | 42 | 52.38% | 47.62% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1124256438 | T->C | INTERGENIC | None |