Detailed information of SNP:
|
SNP ID:
sf1124279097(Gbrowse)
Chromosome: chr11 Position: 24279097 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1332 | 95.57% | 4.43% |
| All Indica | 728 | 92.31% | 7.69% |
| All Japonica | 486 | 99.79% | 0.21% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 337 | 89.61% | 10.39% |
| Indica II | 195 | 91.28% | 8.72% |
| Indica Intermediate | 196 | 97.96% | 2.04% |
| Temperate Japonica | 333 | 99.70% | 0.30% |
| Tropical Japonica | 86 | 100.00% | 0.00% |
| Japonica Intermediate | 67 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 37 | 94.59% | 5.41% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1124279097 | G->A | LOC_Os11g41280(LOC_Os11g41280.1) | Synonymous |