Detailed information of SNP:
|
SNP ID:
sf1124307898(Gbrowse)
Chromosome: chr11 Position: 24307898 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1393 | 83.92% | 16.08% |
| All Indica | 791 | 87.61% | 12.39% |
| All Japonica | 483 | 86.34% | 13.66% |
| Aus | 64 | 35.94% | 64.06% |
| Indica I | 372 | 82.26% | 17.74% |
| Indica II | 211 | 92.89% | 7.11% |
| Indica Intermediate | 208 | 91.83% | 8.17% |
| Temperate Japonica | 324 | 94.75% | 5.25% |
| Tropical Japonica | 91 | 54.95% | 45.05% |
| Japonica Intermediate | 68 | 88.24% | 11.76% |
| Group VI/Aromatic | 14 | 28.57% | 71.43% |
| Intermediate | 41 | 78.05% | 21.95% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1124307898 | A->G | INTERGENIC | None |