Detailed information of SNP:
|
SNP ID:
sf1124340923(Gbrowse)
Chromosome: chr11 Position: 24340923 |
Major allele:
A
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1375 | 93.75% | 6.25% |
| All Indica | 797 | 100.00% | 0.00% |
| All Japonica | 477 | 82.39% | 17.61% |
| Aus | 46 | 95.65% | 4.35% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 212 | 100.00% | 0.00% |
| Indica Intermediate | 210 | 100.00% | 0.00% |
| Temperate Japonica | 316 | 74.68% | 25.32% |
| Tropical Japonica | 94 | 97.87% | 2.13% |
| Japonica Intermediate | 67 | 97.01% | 2.99% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 100.00% | 0.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1124340923 | T->A | INTERGENIC | None |