Detailed information of SNP:
|
SNP ID:
sf1124344179(Gbrowse)
Chromosome: chr11 Position: 24344179 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1418 | 76.16% | 23.84% |
| All Indica | 799 | 84.86% | 15.14% |
| All Japonica | 496 | 60.48% | 39.52% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 80.80% | 19.20% |
| Indica II | 213 | 92.49% | 7.51% |
| Indica Intermediate | 211 | 84.36% | 15.64% |
| Temperate Japonica | 335 | 54.03% | 45.97% |
| Tropical Japonica | 93 | 65.59% | 34.41% |
| Japonica Intermediate | 68 | 85.29% | 14.71% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 42 | 80.95% | 19.05% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1124344179 | T->C | LOC_Os11g41350(LOC_Os11g41350.1) | Synonymous |