Detailed information of SNP:
|
SNP ID:
sf1124360256(Gbrowse)
Chromosome: chr11 Position: 24360256 |
Major allele:
C
Minor allele: G Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1379 | 73.75% | 26.25% |
| All Indica | 799 | 84.86% | 15.14% |
| All Japonica | 457 | 52.52% | 47.48% |
| Aus | 67 | 92.54% | 7.46% |
| Indica I | 375 | 80.80% | 19.20% |
| Indica II | 213 | 92.96% | 7.04% |
| Indica Intermediate | 211 | 83.89% | 16.11% |
| Temperate Japonica | 296 | 60.81% | 39.19% |
| Tropical Japonica | 94 | 38.30% | 61.70% |
| Japonica Intermediate | 67 | 35.82% | 64.18% |
| Group VI/Aromatic | 14 | 35.71% | 64.29% |
| Intermediate | 42 | 76.19% | 23.81% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1124360256 | C->G | LOC_Os11g41365(LOC_Os11g41365.1) | Non-Synonymous SNP |