Detailed information of SNP:
|
SNP ID:
sf1124367960(Gbrowse)
Chromosome: chr11 Position: 24367960 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1418 | 50.28% | 49.72% |
| All Indica | 799 | 22.65% | 77.35% |
| All Japonica | 496 | 87.30% | 12.70% |
| Aus | 67 | 98.51% | 1.49% |
| Indica I | 375 | 6.67% | 93.33% |
| Indica II | 213 | 44.13% | 55.87% |
| Indica Intermediate | 211 | 29.38% | 70.62% |
| Temperate Japonica | 335 | 94.63% | 5.37% |
| Tropical Japonica | 94 | 68.09% | 31.91% |
| Japonica Intermediate | 67 | 77.61% | 22.39% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 45.24% | 54.76% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1124367960 | C->T | LOC_Os11g41380(LOC_Os11g41380.1) | INTRON |