Detailed information of SNP:
|
SNP ID:
sf1124373968(Gbrowse)
Chromosome: chr11 Position: 24373968 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1419 | 90.27% | 9.73% |
| All Indica | 799 | 91.86% | 8.14% |
| All Japonica | 497 | 85.92% | 14.08% |
| Aus | 67 | 98.51% | 1.49% |
| Indica I | 375 | 94.40% | 5.60% |
| Indica II | 213 | 96.71% | 3.29% |
| Indica Intermediate | 211 | 82.46% | 17.54% |
| Temperate Japonica | 335 | 81.19% | 18.81% |
| Tropical Japonica | 94 | 97.87% | 2.13% |
| Japonica Intermediate | 68 | 92.65% | 7.35% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 97.62% | 2.38% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1124373968 | T->C | LOC_Os11g41390(LOC_Os11g41390.1) | INTRON |