Detailed information of SNP:
|
SNP ID:
sf1124376877(Gbrowse)
Chromosome: chr11 Position: 24376877 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1416 | 78.81% | 21.19% |
| All Indica | 797 | 67.88% | 32.12% |
| All Japonica | 497 | 96.18% | 3.82% |
| Aus | 67 | 67.16% | 32.84% |
| Indica I | 375 | 64.53% | 35.47% |
| Indica II | 212 | 74.06% | 25.94% |
| Indica Intermediate | 210 | 67.62% | 32.38% |
| Temperate Japonica | 335 | 97.31% | 2.69% |
| Tropical Japonica | 94 | 92.55% | 7.45% |
| Japonica Intermediate | 68 | 95.59% | 4.41% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 92.68% | 7.32% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1124376877 | C->T | LOC_Os11g41390(LOC_Os11g41390.1) | INTRON |