Detailed information of SNP:
|
SNP ID:
sf1124400861(Gbrowse)
Chromosome: chr11 Position: 24400861 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1414 | 75.60% | 24.40% |
| All Indica | 799 | 98.62% | 1.38% |
| All Japonica | 494 | 36.03% | 63.97% |
| Aus | 66 | 86.36% | 13.64% |
| Indica I | 375 | 99.73% | 0.27% |
| Indica II | 213 | 98.59% | 1.41% |
| Indica Intermediate | 211 | 96.68% | 3.32% |
| Temperate Japonica | 334 | 13.17% | 86.83% |
| Tropical Japonica | 93 | 90.32% | 9.68% |
| Japonica Intermediate | 67 | 74.63% | 25.37% |
| Group VI/Aromatic | 13 | 76.92% | 23.08% |
| Intermediate | 42 | 85.71% | 14.29% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1124400861 | T->C | INTERGENIC | None |